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A new instruction movie showing how to use the pairwise alignment on the MIRRI-IS website has been made available.
See also the list of available instruction movies.
Members of MIRRI-IT integrate the BY-COVID consortium
Braga (Portugal) and Turin (Italy), 29 October 2021
It has been officially launched a new €12 million Horizon Europe funded project, BeYond-COVID (BY-COVID), which will tackle the data challenges that can hinder effective pandemic response. The core aim of the project is to ensure that data on SARS-CoV-2 and other infectious diseases can be found and used by everyone.
BY-COVID is an interdisciplinary project that unites life science, medical, policy, social science and public health experts from across Europe. Led by ELIXIR, the project has 53 partners from 20 European countries. It will run for three years and is part of the European Commission’s HERA Incubator plan “Anticipating together the threat of COVID-19 variants”.
MIRRI, the pan-European distributed Research Infrastructure for the preservation, study, provision and valorisation of microbial resources and biodiversity, will take part in the project BY-COVID through the participation of three of the member organisations of its Italian node, MIRRI-IT, namely: Ospedale Policlinico San Martino (USMI), Istituto Zooprofilattico Sperimentale delle Venezie (IZSVe), and Istituto Zooprofilattico Sperimentale della Lombardia e dell’Emilia Romagna (IZSLER).
According to its Executive Director, Luís Soares, “MIRRI has a pivotal role to play on the response to microbialrelated emergencies, since we bring together a comprehensive set of resources, data, services and expertise, coming from our many partner organisations, which provide real added-value for researchers and companies working in the field of human and human-animal infectious diseases, or in the development of new diagnostic or therapeutic solutions”.
Paolo Romano, principal investigator of MIRRI-IT in the project, adds that “The contribution provided by MIRRI partners to BY-COVID, while relatively limited in person-month effort, is very relevant for the best results of the project. The contribution of the Ospedale Policlinico San Martino will bring important knowledge and expertise in the health domain, while the other MIRRI-IT partners will provide a unique expertise in the domain of veterinary health and especially in infective diseases of zoonotic origin”.
The project BY-COVID, in a nutshell
BY-COVID will build and expand upon the successful COVID-19 Data Platform, a resource initiated in the early stages of the pandemic and led by EMBL-EBI. Since its launch, many countries have established their own national data hubs, which ensures that data produced locally can be instantaneously connected and shared with the main COVID-19 Data Portal. Rather than focus purely on providing technical solutions to the biological data, BY-COVID will work with partners such as the Versatile emerging infectious disease Observatory (VEO) and the Public Health Information Research Infrastructure (PHIRI) to incorporate data from a broader range of disciplines, including public health and social sciences.
The BY-COVID project strives to simplify data access and reuse through four key pillars:
- Mobilise data – ensuring raw sequencing data from across the world can be easily submitted to core data hubs.
- Connect data – build the technical capacity to allow linking of sequence data and metadata, expanding beyond scientific and medical data to broader metadata from, for example, public health and economics, and support integration to the COVID-19 Data Portal.
- Standardise data – provide recommended data management protocols to encourage Findable, Accessible, Interoperable and Reusable (FAIR) data standards and interoperability among resources.
- Expose and analyse data – support exposure and analysis of FAIR data on infectious diseases such as the regular VEO reports on mutations and variation in publicly shared SARS-CoV-2 data and the open COVID-19 Galaxy analysis platform.
For more information, visit the BY-COVID website at by-covid.org.
The Microbial Resource Research Infrastructure (MIRRI) is the pan-European distributed Research Infrastructure for the preservation, systematic investigation, provision and valorisation of microbial resources and biodiversity. It brings together 50+ microbial domain Biological Resource Centres (mBRCs), culture collections and research institutes from ten European countries and one associated country, namely: Belgium, France, Greece, Italy, Latvia, Netherlands, Poland, Portugal (headquarters), Romania, Russia and Spain.
MIRRI serves the bioscience and the bioindustry communities by facilitating the access, through a single point, to the broadest range of high-quality microorganisms, their derivatives, associated data and services, with a special focus on the domains of Health & Food, Agro-Food, and Environment & Energy. By serving its users, by collaborating with other research infrastructures and by working with public authorities and policy makers, MIRRI contributes to the advancement of research and innovation in life sciences and biotechnology, as well as for a sustainable, competitive and resilient bioeconomy.
More information and contacts: mirri.org | linkedin.com/company/microbial-resource-researchinfrastructure/ | email@example.com.
The Joint Research Unit MIRRI-IT is aimed at the implementation of the Italian node of MIRRI and at the development of the Italian network of collections of microbial resources. Its mission is to overcome fragmentation in availability of resources and services, enhancing the quality management system of the collections, while focusing on needs and challenges of the stakeholders interested in the biotechnological transfer of these resources. MIRRI-IT currently incudes five partners and 18 associated partners from Universities, Public Research Institutes and Hospitals. Partners are active in many domains of interest for microbial resources, including food and nutrition, agriculture, forestry and environment, as well as human and animal health.
For more information see mirri-it.it or get in touch by email with firstname.lastname@example.org.
BY-COVID is funded by the European Union’s Horizon Europe research and innovation programme under grant agreement number 101046203.
2021-2022 Joint Call
“Supporting the protection of biodiversity and ecosystems
across land and sea”
THEME 1: Knowledge for identifying priority conservation areas, establishing effective and resilient ecological networks, enhancing species-based protection and preserving genetic diversity
THEME 2: Multiple benefits and costs of biodiversity and ecosystem protection: synergies and trade-offs
THEME 3: Effective management and equitable governance to deliver bold conservation outcome
The call covers all environments, i.e. terrestrial, freshwater and marine. It also covers research on biodiversity conservation in the Outermost Regions (ORs) and Overseas Countries and Territories (OCTs) of the EU.
A two-step process will apply, with a mandatory submission of pre-proposals at the first step and submission of full proposals at the second step.
- Deadline for pre-proposals submission (mandatory): Tuesday 30 November 2021, 15:00 CET (local time in Brussels)
- Deadline for full-proposals submission: Thursday 14 April 2022, 15:00 CEST (local time in Brussels)
For further information, see the Open Call web site at https://www.biodiversa.org/1772
For general information on the call, contact the Call Secretariat: email@example.com (Juliette Bettus, Céline Billière and Sophie Germann)
IT officer position available at the Spanish Type Culture Collection – University of Valencia (CECT-UV), UV Science Park, Catedràtic Agustín Escardino Benlloch, 9, Paterna, Valencia.
Gross salary 38.000 €
The contract will be bounded to the project IS_MIRRI21, funded by Horizon 2020, to implement the Microbial Resource Research Infrastructure (MIRRI).
Official call and procedure to apply: Soon available.
For contact information see below.
Estimated commencement date and duration: From November 2021 to February 2023. Prolongation possible subject to the availability of funds and extension of the project.
Bachelor’s degree in Information Technology, Computer Science, Information Systems, or a related field. Bachelor’s degree in Biology, Biotechnology or a related field.
PROFILE OF THE WORKING POSITION
IT officer specialized in programming and database management.
- Experience in web development tools (jQuery, Vue.js, Agilent, BootStrap, etc.)
- Knowledge of cloud services PaaS and SaaS
- Experience in relational (MySQL, PostgreSQL, etc.) and non-relational (MongoDB, etc.) database management systems
- Working experience in Internationally Distributed Research Infrastructures in particular, or at least in Research Infrastructures in general
- Participation in research projects related with biodiversity (preferably) or with Life Sciences (in general) would be an asset
- Proficiency in English (oral and written)
TASKS AND RESPONSIBILITIES
- Manage the MIRRI applications generated within the project
- Manage users according to specifications to ensure access and availability of the system resources
- Give IT support to MIRRI’s Central Coordinating Unit
- Contribute to the design of an interoperable virtual platform providing the MIRRI service offer, ensuring data privacy and security, in collaboration with the Center for Computer Graphics (CCG) based in Braga (Portugal)
- Contribute, together with CCG, in the development of a MIRRI virtual platform to compile, prepare, enrich, store and process a large amount of heterogeneous data (different sources and formats), allowing access to data services related to biological material (MIRRI-IS)
- Contribute, together with the MIRRI ICT team, to export the catalogue data of MIRRI Culture Collection partners to be incorporated into the MIRRI-IS database
- Act as a link of MIRRI-IS with CECT-UV, CCG and LifeWatch (Spain)
- Participate in the project’s tasks (assistance to meetings, elaboration of reports, etc.)
- Willingness to travel to different European cities, mainly to Braga
MIRRI and IS_MIRRI21 will be presented by Dr. Aurora Zuzuarregui from UVEG-CECT on September 8, 2021, at 15:50 CET, at the Chilean III Symposium on Appreciation and Conservation of Microbial Resources.
The agenda can be found at: https://www.cchrgm.cl/wp-content/uploads/2021/09/Programa_III_SIMP_VAL.pdf
Free registration is still open. See here.
We kindly ask you to please share this announce with your colleagues who might be interested in participating.
The IS_MIRRI21 Newsletter #3 has been issued.
Here are some of its highlights:
- MIRRI receives a delegation from the European Council
- Four researchers awarded with funded access to MIRRI/IS_MIRRI21 facilities in 2021
- The Joint Research Unit MIRRI-IT: status and undergoing activities
- IS_MIRRI21 and MIRRI’s participation in future events
- Successful launch of IS_MIRRI21/MIRRI two matchmaking events
- IS_MIRRI21 partners organize a public event for the World Microbiome Day 2021!
- MIRRI launched its online platform at www.mirri.org
Register today and start receiving your copy of the IS_MIRRI21 Newsletters by email.
IS_MIRRI21 Newsletters intend to present the project to its wide-ranging target audiences and inform them about the relevant activities within the project and the achievements that the consortium expects to go in the direction of MIRRI’s stakeholders’ interests and aspirations.
IS_MIRRI21 challenges the users to communicate with it to continue strengthening the MIRRI community as never before and visit its website and social media to stay updated on IS_MIRRI21’s activities.
See all IS_MIRRI21 Newsletters here.
IT officer position available at the Spanish Type Culture Collection – University of Valencia (CECT-UV), UV Science Park, Valencia.
The contract will be bounded to the project IS_MIRRI21, funded by Horizon 2020, to implement the Microbial Resource Research Infrastructure (MIRRI)
Estimated duration: from October 2021 to February 2023. Prolongation possible subject to the availability of funds and extension of the project. Gross salary 38,000 € / year.
Bachelor’s degree in Information Technology, Computer Science, Information Systems, or a related field.
Bachelor’s degree in Biology, Biotechnology or a related field.
Official call and procedure to apply: https://links.uv.es/cect2/IT_Officer
See details in the official announcement leaflet.
The one-hour webinar will be presented by partners and experts from the IS_MIRRI21 project with background in microbiology and biotechnology who will convey the messages based on their field and professional experiences. The event will be a combination of presentations, quizzes and videos with dedicated sessions for the audiences to ask questions and interact with the speaker.
The key objectives of the event are:
- Present how EU funded projects such as IS_MIRRI21 are supporting the research and innovation ecosystem;
- Give an overall overview of how culture collections are used to preserve biodiversity and the roles of microbes in the sustainability of the environment;
- Discuss how microorganisms can be used by each and every citizen to create a sustainable world.
|11:00||Welcome and introduction to speakers
Tedora Aibu (SPI)
|11:05||Demo session: Microbiome and Microorganisms for a Sustainable World
Anna Poli (UNITO)
|11:20||Let’s play: Quiz on microbial biodiversity and sustainability
Giulia Cheloni (INRAE), Anna Poli (UNITO), Tedora Aibu (SPI)
|11:30||Who we are and what we do in IS_MIRRI21/MIRRI
Tedora Aibu (SPI)
|11:35||Culture collections and their role in microbial biodiversity preservation and exploration
Giulia Cheloni (INRAE)
|11:45||Open floor: Q&A|
Matchmaking for Horizon Europe opportunities and MIRRI membership
15 and 17 June 2021, 14:00 CEST
Held on the ZOOM platform
Register HERE for both events.
Organised by the University of Minho (UMinho) and Sociedade Portuguesa de Inovação (SPI) in collaboration with the RI-VIS H2020 project
Nelson Lima (University of Minho, UMinho); Joanna Bucka-Kolendo (Institute of Agricultural and Food Biotechnology, IAFB), Rosa Aznar (University of Valencia, UVEG-CECT), Gerard Verkleij (Koninklijke Nederlandse Akademie Van Wetenschappen, KNAW), Isabel Carvalho Oliveira, Maria João Fernandes, Cristiana Leandro and Daniel Carapau (Portugal-Europe R&I Network, PERIN)
Implementation and Sustainability of Microbial Resource Research Infrastructure for the 21st Century (IS_MIRRI21) is a three-year project funded under the Horizon 2020 programme of the European Commission. IS_MIRRI21 is a scientific project that aims to establish a pan-European research infrastructure called Microbial Resource Research Infrastructure (MIRRI) as a sustainable entity with a set of its own diverse services and offers. IS_MIRRI21 took-off in February 2020 with 14 European partners and eight third parties, 20 of which are academic institutions and research infrastructures. The consortium members of IS_MIRRI21 are jointly working with the objective of alleviating the current fragmentation of bio-resource holdings and information, eliminating duplication and redundancy at the national and pan-European level.
MIRRI, as a sustainable end-product, intends to connect biological resource holders and researchers in order to facilitate the efficient delivery of resources and services and meet the needs of innovation in Life Sciences and biotechnology by driving collaboration across borders and disciplines. MIRRI is made up of more than 50 member organisations including academic institutions, microbial Biological Resource Centres (mBRCs), Culture Collections (CCs) and experts from 11 European countries (Belgium, France, Greece, Italy, Latvia, The Netherlands, Poland, Portugal, Romania, Russian Federation and Spain). MIRRI is a non-profit RI designed through the collaboration of European research institutes, universities, culture collections and consultancy organisations with a special focus on the domains of Health & Food, Agro-Food, and Environment & Energy. MIRRI’s services and offers are supplied through the resources and expertise of its members to induce and sustain transnational cooperation and coordination in research and innovation within the sectors of Life Sciences and Biotechnology. In its present capacity, MIRRI holds over 600,000 strains of microorganisms and microbiological resources, over 70 different types of services (including training, education and consultancy offers) with more than 30 workflows and has more than 300 direct participants and beneficiaries in the organisation.
MIRRI will soon be recognised as an ERIC (European Research Infrastructure Consortium) to serve users from biosciences and bioindustry by facilitating access to a broad range of high quality bioresources and data in a legally compliant way. Through collaboration with other research infrastructures and by working with public authorities and policy makers, MIRRI contributes to the advancement of research and innovation in Europe to create a sustainable, competitive and resilient bioeconomy.
Whether as an expert, a Member State, an academic institution or a culture collection, MIRRI offers its members the opportunity to be part of a large and dynamic laboratory as a whole, sharing and exchanging knowledge, providing services, gaining visibility and playing a unique role in the European scientific research and innovation landscape of Food, Health, Agriculture, Energy, Environmental Sciences and more. MIRRI’s membership is open to a range of stakeholders in the global innovation community. With the objective of exploiting MIRRI’s resources through collaboration with other RIs in Europe and Latin America thereby advancing bioscience innovation and research, these two events have been set up with the aim of presenting opportunities to bring innovation actors in Life Sciences and biotechnology to the same table. In synergy with RI-VIS, a Horizon 2020 funded project designed to increase the visibility of European research infrastructures (RIs) to new communities in Europe and beyond, IS_MIRRI21 partners and innovation actors from Research and Development (R&D) frameworks in Europe will present funding opportunities for joint collaboration in the above-mentioned domains and how to become a member of MIRRI’s network.
Both agendas for the webinar on 15 June and workshop on 17 June can be found here as well as in the web site of MIRRI-IT at Agenda of IS_MIRRI21 virtual events: Matchmaking for Horizon Europe opportunities and MIRRI membership.
Where to register?
Registration for both events is free but compulsory in order to receive the links and updates prior to the event. Registration is open until the launch of the events.
Registration link: https://forms.gle/fYr6f3rHchNjG3yF9